PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS60825.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 122aa    MW: 13723.4 Da    PI: 10.7611
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS60825.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.64.8e-181663455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 hn  ErrRRdriN+++  L++l+P++      K++Ka+ L +A++Y+ksLq
  EPS60825.1 16 VHNLSERRRRDRINEKMRALQQLIPWC----TNKVDKASLLDEAIQYLKSLQ 63
                6*************************9....68******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-22982IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.4091262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-211572IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-151563IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.08E-151767No hitNo description
SMARTSM003536.7E-171868IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
EARKQIGGSR SRVAQVHNLS ERRRRDRINE KMRALQQLIP WCTNKVDKAS LLDEAIQYLK  60
SLQLQVQMMS MNYGLVPTVM PPPPMPMMMP VPAVGPPYAS PMMAMMPPPS SSMGMAQLQF  120
PV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014620980.12e-34PREDICTED: transcription factor PIF1-like isoform X2
SwissprotO805361e-33PIF3_ARATH; Transcription factor PIF3
TrEMBLS8C2602e-83S8C260_9LAMI; Uncharacterized protein (Fragment)
STRINGGLYMA13G19250.31e-33(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-32phytochrome interacting factor 3
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]